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ECCMID 2023
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From the archive: ECCMID and more before 2010
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17 April 2023 - O1033
Beyond mpox virus: clinical metagenomics searching for mucocutaneous infections
Pierre Cappy, William Vindrios, Camille Hua, Paul-Louis Woerther, Christophe Rodriguez, Jean-Michel Pawlotsky
16 April 2023 - P1851
Optimised long read 16S metagenomics for clinical diagnostics
Anna Fagerström, Lina Guerra Blomqvist, Frans Wallin, Dimitrios Arnellos, Marita Ekström, Martin Ekman, Martin Sundqvist, Martin Vondracek, Paula Mölling
16 April 2023 - P1845
Optimisation of real-time sequencing for rapid detection of bacterial species and antimicrobial resistance in blood and urine infections
Maria Getino, Rebecca Stout, Frances Davies, Elita Jauneikaite
16 April 2023 - P1840
Optimisation and test performance of metagenomic sequencing for respiratory viral pathogens
Nick Gauthier, Wilson Chan, Samuel Chorlton, Amee Manges
16 April 2023 - P1844
Microbial cell-free DNA sequencing as an addition to conventional diagnostics in neonatal sepsis
Julian Balks, Andreas Müller, Silke Grumaz, Florian Kipfmüller
16 April 2023 - P1850
Metagenomics diagnosis for bloodstream infections using a highly efficient host depletion and bacterial genome amplification protocol from whole blood
Lluis Moragues-Solanas, Daniel Lockhart, Elinor Mcsorley, Justin O’Grady, William Mullen, Matthew Gilmour
16 April 2023 - P1846
Genomic investigations of acute hepatitis of unknown aetiology in children
Sofia Morfopoulou, Sarah Buddle, Oscar Enrique Torres Montaguth, Laura Atkinson, Jose Afonso Guerra-Assuncao, Mahdi Moradi Marjaneh, Riccardo Zenezini Chiozzi, Nathaniel Storey, Luis Campos, J Ciaran Hutchinson, John R Counsell, Gabriele Pollara, Sunando Roy, Cristina Venturini, Juan F Antinao Diaz, Ala'A Siam, Luke J Tappouni, Zeinab Asgarian, Joanne Ng, Killian Hanlon, Alexander Lennon, Andrew Mcardle, Agata Czap, Joshua Rosenheim, Catarina Andrade, Glen Anderson, Jack C D Lee, Rachel Williams, Charlotte A Williams, Helena Tutill, Nadua Bayzid, Luz Marina Martin Bernal, Catherine Moore, Kate Templeton, Claire Neill, Matt Holden, Rory Gunson, Samantha J Shepherd, Priyen Shah, Samantha Cooray, Marie Voice, Michael Steele, Colin Fink, Thomas E Whittaker, Giorgia Santilli, Paul Gissen, Benedikt B Kaufer, Jana Reich, Julien Andreani, Peter Simmonds, Dimah K Alrabiah, Sergi Castellano Hereza, Tommy Rampling, Catherine Houlihan, Katja Hoschler, Tiina Talts, Cristina Celma, Suam Gonzalez, Eileen Gallagher, Ruth Simmons, Conall Watson, Sema Mandal, Maria Zambon, Meera Chand, James Hatcher, Surjo De, Kenneth Baillie, Malcolm Gracie Semple, Joanne Martin, Ines Ushiro-Lumb, Mahdad Noursadeghi, Maesha Deheragoda, Nedim Dino Hadzic, Tassos Grammatikopoulos, Rachel Brown, Chayarani Kelgeri, Konstantinos Thalassinos, Simon N Waddington, Thomas S Jacques, Emma Thomson, Michael Levin, Julianne R Brown, Judith Breuer
16 April 2023 - P1841
Experimental and computational sources of error in metagenomic next-generation sequencing assays
Joash Jun Keat Chu, Patipan Boonsimma, Karrie K K Ko, Kar Mun Lim, Niranjan Nagarajan, Chayaporn Suphavilai
16 April 2023 - P1847
Evaluation of the contribution of shotgun metagenomics in the microbiological diagnosis of liver abscesses
Hadrien Kimseng, Geoffrey Rossi, Maxime Danjean, Camille Chaligne, Adrien Galy, Bérénice Souhail, Frédéric Bert, Véronique Leflon, Vincent Fihman, Bryan Jimenez-Araya, Amandine Caillault, Vanessa Demontant, Sarah Seng, Elisabeth Trawinski, Melissa N Debi, Laure Boizeau, Maxime Ronot, Vincent Leroy, Agnès Lefort, Christophe Rodriguez, Raphael Lepeule, Paul-Louis Woerther
16 April 2023 - P1848
Evaluation of long-read shotgun metagenomic protocols using nanopore sequencing for fast taxonomic and antimicrobial resistance detection
Srinithi Purushothaman, Marco Meola, Stefanie Heller, Tim Roloff, Adrian Egli
16 April 2023 - P1842
Evaluation of clinical utility and analytical performance of a targeted next-generation sequencing test for broad pathogen detection in bronchoalveolar lavage specimens
Priya Velu, Alicia Dillard, Lin Cong, Liliana Serrano, John Sipley, Hanna Rennert
16 April 2023 - P1839
Evaluation of a microbial enrichment kit for shotgun metagenomics and comparison of sequencing approaches using faecal and colonic mucosa samples
Jean-Luc Tison, Julia Rode, Paula Mölling, Ignacio Rangel, Robert-Jan Brummer, Bianca Stenmark
16 April 2023 - P1849
Detection of blaCTX-M genes in the stool of healthy people: culture vs shotgun metagenomics
Edgar Igor Campos-Madueno, Aline I. Moser, Claudia Aldeia, Andrea Endimiani
16 April 2023 - P1838
Comparison of blood-based shotgun and targeted metagenomic sequencing for microbiological diagnosis of infective endocarditis
Laure Flurin, Cody Fisher, Matthew Wolf, Daniel Desimone, Robin Patel
16 April 2023 - P1843
Comparison of 16S rRNA gene metagenomics profile to conventional microbiological cultures of Necrotising Soft-tissue Infections (NSTIs)
Tanvi Vashist, Archana Angrup, Vikas Sharma, Cherring Tandup, Amit Arora, Pallab Ray
16 April 2023 - P1853
Blood2Bac: a rapid, direct-from-blood diagnostic assay for bacteremia using ultrahigh bacterial enrichment nd whole genome sequencing
Douglas Kwon, Manoj Nair, Matthew Turner, Defne Surujon, Ian Herriott, Emily Macleod, Rachel Martin, Cristina Rushton, Alfred Wong, Kaitlin Woodruff, Claire Zimmerman, Linnea Sahlberg, Cabell Maddux, Mohamad Sater, Miriam Huntley
16 April 2023 - P1852
Added value of routine metagenomic next-generation sequencing in diagnosis of infection: a two-years experience
Jacques Fourgeaud, Beatrice Regnault, Vichita Ok, Nicolas Da Rocha, Emilie Sitterlé, Meryem Mekouar, Hélène Faury, Catherine Seels, Delphine Chrétien, Eric Troadec, Isabelle Marques, Gilles Quesne, Pierre Frange, Agnès Ferroni, Marianne Leruez-Ville, Philippe Pérot, Marc Eloit, Anne Jamet
16 April 2023 - P1854
Comparative analysis of four respiratory specimen types by metagenomic sequencing for diagnostic performance in airway diseases
Qing Miao, Hu Bijie, Li Junhua
16 April 2023 - P1808
Comparison of clinical metagenomics to 16S-Sanger sequencing for the bacteriological diagnosis of culture-negative samples
Camille D'Humières, Marie Petitjean, Signara Gueye, Nathan Peiffer-Smadja, Lynda Chalal, Naima Beldjoudi, Goeffrey Rossi, Yann Nguyen, Charles Burdet, Ségolene Perrineau, Diane Le Pluart, Rosa Rahli, Michael Thy, Piotr Szychowiak, Xavier Lescure, Victoire De Lastours, Véronique Leflon-Guibout, Laurène Deconinck, Etienne Ruppé
23 April 2022 - L0164
Pathogen detection by metagenomic next-generation sequencing during neutropenic fever in patients with haematological malignancies: an update of 98 febrile episodes
Eduard Schulz, Silke Grumaz, Stefan Hatzl, Bianca Huber-Kraßnitzer, Thomas Valentin, Maximilian Gornicec, Lisa Kriegl, Barbara Uhl, Alexander Deutsch, Robert Krause, Peter Neumeister
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