Kat Steinke, Flemming Damgaard Nielsen, Karina Gravgaard Thomsen, Sanne Løkkegaard Larsen, Silje Vermedal Høgh, Marianne Nielsine Skov, Thomas Vognbjerg Sydenham
Poster Session
ECCMID 2023
Courses & Events
Guidelines
From the archive: ECCMID and more before 2010
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16 April 2023
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P1864
User-friendly bioinformatics for routine analysis of bacterial isolate sequencing in a clinical setting
16 April 2023
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P1862
Predicting ESBL with over 99% certainty, fast and for free: do we still require expensive and slow laboratory confirmation tests?
16 April 2023
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P1857
Pipeline validation for carbapenem-resistant K. pneumoniae
16 April 2023
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P1863
PHINISH: a bacterioPHage genome fINISHing pipeline for phage therapy
16 April 2023
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P1856
On-plate colistin resistance detection in K. pneumoniae by MALDI-TOF MS biomarker discovery
16 April 2023
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P1859
Calling zero: a new foundation for diagnostic bacterial genomics
16 April 2023
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P1865
A proposal for standard nomenclature and interchange formats for tiling PCR primer scheme definitions
16 April 2023
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P1861
In silico extended virulence profiling of Enterococcus faecium and Enterococcus lactis isolates by use of whole genome sequencing data
Louise Roer, Hülya Kaya, Ana P. Tedim, Carla Novais, Teresa M. Coque, Luísa Peixe, Henrik Hasman, Anette M. Hammerum, Ana R. Freitas
Poster Session
16 April 2023
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P1858
Microbial community composition revealed by total RNA metatranscriptomics across three domains of life is important in assessing survival of pathogens outside the host
16 April 2023
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P1855
Do our PCR catch the bugs? Quality control of primers and probes using public data
23 April 2022
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L0166
Benchmarking tools for taxonomic classification of short and erroneous nanopore reads for clinical metagenomics
23 April 2022
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P1197
P-DOR: a pipeline to disentangle outbreaks rapidly
23 April 2022
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P1198
The virulome, a heterogeneous concept? Comparison of virulence factors and their conservation
23 April 2022
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P1199
MeSS: a metagenomic sequence simulator for in silico sample generation
23 April 2022
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P1200
Infection metallomics for critical care in the post-COVID-19 era
23 April 2022
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P1201
Is simple better than complex? Comparison of bioinformatic pipelines for rapid and straight forward interpretation of nanopore whole genome sequenced bacterial isolates
23 April 2022
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P1202
Bioinformatic prediction of highly specific surface bacterial proteins: potential biomarkers in a lateral flow assay for bovine mastitis diagnosis
23 April 2022
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P1203
An externally validated machine learning model predicts the outcome of blood cultures in the emergency room and safely reduces their overuse
23 April 2022
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P1204
Fast and accurate pathogen identification with NGS 16S amplicon analysis in the cloud
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