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ESCMID Global 2024
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From the archive: ECCMID and more before 2010
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27 April 2024 - P2235
Advancing Streptococcus pneumoniae capsular typing: MALDI-TOF mass spectrometry and machine learning algorithms
Jonathan Zintgraff, Florencia Rocca, Nahuel Sanchez Eluchans, Maria Alicia Moscoloni, Claudia Lara, Mauricio Santos
27 April 2024 - P2236
Evaluation of a real-time plasmid transmission detection pipeline
Natalie Scherff, Thomas Weniger, Jörg Rothgänger, Leah Roberts, Alexander Mellmann, Dag Harmsen,
27 April 2024 - P2237
Using NCBI's pathogen detection system to determine the distribution of KPC-family carbapenemases in Klebsiella pneumoniae isolates from China and the U.S.
Michael Feldgarden, Vyacheslav Brover, Boris Fedorov, Daniel Haft, Arjun Prasad, Martin Shumway, William Klimke
27 April 2024 - P2238
Reference guided clustering for the identification of bacteria using 16S long reads
Korneel Dumon, Sam Dierickx, Sara Cleemput, Wim Dumon, Koen Deforche
27 April 2024 - P2239
Costs of an infection risk scan in a hospital
Miranda Van Rijen, Heidi Kievits, Linda Kilsdonk, Gonny Moen, Jannie Romme, Esther Weterings, Veronica Weterings, Mark Tinga, Wouter Van Den Bijllaardt,
27 April 2024 - P2240
Design of a plasmid classification workflow for local bacterial population analysis
Marketa Nykrynova, Matej Bezdicek, Martina Lengerova, Helena Vitkova
27 April 2024 - P2241
Mega pipeline: an automated pipeline for easy microbial whole genome sequencing analysis
Marc Finianos, Jaroslav Hrabák, Ibrahim Bitar
27 April 2024 - P2242
Batch effect correction in MALDI-TOF spectra for microorganism classification
Erica Padial Fuillerat, Manuel J. Arroyo, Luis Mancera, Coral Del Val
27 April 2024 - P2243
Deciphering global patterns of antimicrobial resistance in key gram-negative pathogens using indirect predictors
Sneha Kotian, Ernst Schäfer, Constance Schultsz, Rik Oldenkamp
27 April 2024 - P2244
A comprehensive database for the direct identification of plasmid transfer genes
Csongor Freytag, Bálint Timmer, Gábor Kardos, Levente Laczkó,
27 April 2024 - P2245
Metagenomic sample composition explains variance in taxonomic classification performance
Iris Gold Rodal
16 April 2023 - P1864
User-friendly bioinformatics for routine analysis of bacterial isolate sequencing in a clinical setting
Kat Steinke, Flemming Damgaard Nielsen, Karina Gravgaard Thomsen, Sanne Løkkegaard Larsen, Silje Vermedal Høgh, Marianne Nielsine Skov, Thomas Vognbjerg Sydenham
16 April 2023 - P1862
Predicting ESBL with over 99% certainty, fast and for free: do we still require expensive and slow laboratory confirmation tests?
Matthijs Berends, Dennis Souverein, Joppe Van Duijn, Rogier Schade, Sjoerd Euser, Andreas Voss
16 April 2023 - P1857
Pipeline validation for carbapenem-resistant K. pneumoniae
Andressa Almeida Vieira, Bruna Candia Piccoli, Bruna Campestrini Casarin, Luiza Funck Tessele, Thaís Regina Y Castro, Roberta Cristina Ruedas Martins, Alexandre Vargas Schwarzbold, Priscila Trindade
16 April 2023 - P1863
PHINISH: a bacterioPHage genome fINISHing pipeline for phage therapy
Horiba Kazuhiro, Angela Camporeale, Anni-Maria Örmälä-Tiznado, Christian Giske
16 April 2023 - P1856
On-plate colistin resistance detection in K. pneumoniae by MALDI-TOF MS biomarker discovery
Elena De Carolis, Valentino Costabile, Gianluca Foglietta, Vincenzo Di Pilato, Gian Maria Rossolini, Maurizio Sanguinetti, Carlo Federico Perno, Paola Bernaschi
16 April 2023 - P1860
Hybrid mapping for plasmid content determination in NGS data
Marketa Nykrynova, Matej Bezdicek, Kristyna Dufkova, Martina Lengerova, Helena Skutkova
16 April 2023 - P1859
Calling zero: a new foundation for diagnostic bacterial genomics
James Littlefair, Benedict Uttley, Dan Frampton, Gareth Linsmith, John Peden, Nigel Saunders
16 April 2023 - P1865
A proposal for standard nomenclature and interchange formats for tiling PCR primer scheme definitions
Bede Constantinides, Emma Griffiths, Finlay Maguire, Duncan Maccannell, Peter Van Heusden
16 April 2023 - P1861
In silico extended virulence profiling of Enterococcus faecium and Enterococcus lactis isolates by use of whole genome sequencing data
Louise Roer, Hülya Kaya, Ana P. Tedim, Carla Novais, Teresa M. Coque, Luísa Peixe, Henrik Hasman, Anette M. Hammerum, Ana R. Freitas
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