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ECCMID 2023
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Guidelines
From the archive: ECCMID and more before 2010
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12 July 2021 - 3419
Large scale hybrid assembly reveals the plasmid landscape associated with Gram-negative bloodstream infections
Sam Lipworth, S. Lipworth (1), W. Matlock (1), K. Chau (1), L. Barker (1), S. George (1), J. Kavanagh (1), T. Davies (1), A. Vaughan (1), M. Andersson (2), K. Jeffery (2), S. Oakley (2), M. Morgan (2), N. Sanderson (1), J. Swann (1), S. Hopkins (3), T. Peto (1), D. Crook (1), A.S. Walker (1), N. Stoesser (1)
12 July 2021 - 3703
Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the hospital environment: a bacterial genome-wide association study
Bernadette Young, B. Young (1, 2), C.H. Wu (1), J. Charlesworth (1), S. Earle (1), J. Price (3, 4), N.C. Gordon (1, K. Cole (3, L. Dunn (2), E. Liu (2), S. Oakley (2), H. Godwin (1), R. Fung (1), R. Miller (1), K. Knox (1), A. Votintseva (1), T.P. Quan (1), R. Tilley (5), M. Scarborough (1, D. Crook (1, T. Peto (1, A.S. Walker (1), M. Llewelyn (3, D. Wilson (1)
11 July 2021 - 3371
Flanker reveals differential carbapenem susceptibility associated with blaOXA-48 flanking sequences
Sam Lipworth, S. Lipworth (1), W. Matlock (1), B. Constantinides (1), T. Peto (1), A.S. Walker (1), D. Crook (1), S. Hopkins (2), L. Shaw (1), N. Stoesser (1)
09 July 2021 - 3693
Modern solutions for an ancient pathogen: whole genome sequencing for diagnosis of lepromatous leprosy
Bernadette Young, B. Young (1, 2), S. Lipworth (1), K. Dingle (1), N. Sanderson (1), B. Alice (1), T. Walker (1, L. O'neill (2), D. Crook (1, S. Sharma (2), A. Brent (2, 1)
24 April 2018 - P2408
BashTheBug.net: Using citizen scientists to consistently measure the growth of M. tuberculosis on a 96-well microtitre plate
Maite Ruiz Perez de Pipaon, P. Fowler, A. Gibertoni Cruz, S. Hoosdally, D. Foster, T. Walker, A. Walker, T. Peto, D. Crook
24 April 2018 - P2413
SNPs to identify TB (SNP-IT): a novel whole-genome single-nucleotide polymorphism (SNP) based approach for identifying all members of the Mycobcaterium tuberculosis complex
Sam Lipworth, S. Lipworth, R. Jajou, H. de Neeling, P. Bradley, W. Van der Hoek, Z. Iqbal, G. Smith, T. Peto, D. Crook, T. Walker, D. van Soolingen0
24 April 2018 - O1086
Towards 'direct from sample' determination of Mycobacterium tuberculosis whole-genome sequences using the Nanopore DNA sequencing platform
Kate Dingle, S. George, Y. Xu, N. Sanderson, E. Robinson, A. Hubbard, D. Griffiths, M. Morgan, S. Thulborn, L. Pankhurst, S. Hoosdally, D. Foster, S. Walker, T. Peto, D. Crook, K. Dingle
24 April 2018 - P2107
Phylogeographical analysis reveals the historic origin, emergence and evolutionary dynamics of methicillin-resistant Staphylococcus aureus ST228 in Switzerland
Mohamed M. H. Abdelbary, M. Abdelbary, E. Feil, L. Senn, C. Petignat, G. Prod'hom, J. Schrenzel, P. François, G. Renzi, G. Werner, F. Layer0, B. Strommenger, A. Pantosti, M. Monaco, D. Olivier, A. Deplano, A. Budimir, S. Kalenic, N. Gordon, A. Sheppard, D. Crook, H. Grundmann, D. Blanc0
23 April 2018 - P1566
Understanding rifampicin resistance: placing key genetic mutations in their structural context
Philip Fowler, P. Fowler, T. Walker, A. Walker, T. Peto, D. Crook
23 April 2018 - O0868
WGS investigation of three OXA-48 carbapenemase bacteraemias and sink colonization in a haematology unit
Kevin Kaibond Chau, K. Chau, A. Peniket, K. Jeffery, L. Butcher, G. Pill, L. Rylance-Knight, S. George, M. Andersson, T. Peto, S. Walker, D. Crook, A. Mathers, N. Stoesser
22 April 2018 - O0569
Whole-genome sequencing of methicillin-resistant Staphylococcus aureus reveals unrecognized hospital and community transmission
Leon Peto, L. Peto, N. Gordon, D. Eyre, D. Crook, A. Walker, T. Peto
22 April 2018 - O0499
Whole genome sequencing to predict clarithromycin resistance in M. abscessus
Thomas R. Fritsche, S. Lipworth, N. Hough, L. Leach, M. Morgan, M. Andersson, K. Jeffery, T. Peto, D. Crook, E. Robinson, G. Smith, T. Walker
22 April 2018 - O0563
Metagenomic diagnosis of viral pathogens in clinical nasopharyngeal aspirate samples by nanopore direct sequencing
Yifei Xu, Y. Xu, S. Pullan, K. Lewandowski, N. Sanderson, A. Vaughan, T. Street, R. Vipond, M. Carroll, S. Walker, P. Simmonds, D. Foster, P. Matthews, T. Peto, D. Crook
21 April 2018 - O0172
Epidemiology and successful control of a Candida auris outbreak in a UK intensive care unit driven by multi-use patient monitoring equipment
David Eyre, D. Eyre, A. Sheppard, H. Madder, I. Moir, R. Moroney, T. Quan, D. Griffiths, S. George, L. Butcher, M. Morgan, R. Newnham, M. Sunderland, T. Clarke, D. Foster, P. Hoffman, A. Borman, E. Johnson, G. Moore, C. Brown0, S. Walker, T. Peto, D. Crook, K. Jeffery
12 April 2016 - O557
C. difficile (CD) ribotypes exhibit variable patient-to-patient transmission rates, as determined by whole-genome sequencing (WGS), suggesting differing reservoirs and modes of acquisition
Jessica Martin, Martin Jessica, J. Martin, D. Eyre, W. Fawley, S. Walker, D. Crook, M. Wilcox
12 April 2016 - P1441
Whole-genome sequencing of Mycobacterium abscessus infected patients in the Oxfordshire area
Kathryn Turner, Turner Kathryn, Stielow Benjamin, K. Turner, J. Wrightson, T. Walker, D. Crook, L. Pankhurst
11 April 2016 - EP0317
Rapid point-of-care genome assembly in-your-pocket resolves multidrug-resistant Gram-negative bacterial genomes
Rachel Norris, Norris Rachel, R. Norris, A. Sheppard, N. Stoesser, A. Votintseva, D. Crook, Z. Iqbal
11 April 2016 - O431
Whole-genome sequencing directly from blood culture to diagnose and predict antibiotic susceptibility for Escherichia coli and Klebsiella spp. bacteraemia
Fernando Gonzalez-Candelas, Pankhurst Louise, L. Pankhurst, H. Phan, N. Stoesser, L. Anson, S. Walker, T. Peto, D. Crook
11 April 2016 - O450
Role of within-host evolution in Staphylococcus aureus infection
Kelly Li, Young Bernadette, B. Young, C. Gordon, D. Crook, T. Peto, J. Paul, M. Llewelyn, S. Walker, D. Wilson
10 April 2016 - O262
Diagnosis and resistotyping of Mycobacterium tuberculosis by whole genome sequencing: prospective comparison with routine practice
Grace Smith, Smith Grace, G. Smith, Z. Bawa, P. Rathod, J. Mowbray, T. Quan, P. Welch, L. Pankhurst, T. Walker, S. Gharbia, S. Walker, T. Peto, D. Crook, D. Wyllie
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