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ESCMID Global 2024
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Guidelines
From the archive: ECCMID and more before 2010
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29 April 2024 - O0949
The European network for the rapid identification of anaerobes part two: continuing the optimisation of the MALDI-TOF MS database 
Kathleen Boiten, J. Rossen, A. Veloo
11 July 2021 - 3226
Rapid antibiotic resistance prediction from genome sequence data for Mycobacterium tuberculosis using long- compared to short-read sequencing
Nilay Peker, N. Peker (1), L. Schuele (1), N. Kok (1), M. Terrazos (2), S.M. Neuenschwander (2), J. Beer (1), O. Akkerman (3), S. Peter (4), A. Ramette (2), M. Merker (5), S. Niemann (5), N. Couto (1, 6), B. Sinha (1), J. Rossen (1, 7)
09 July 2021 - 2520
Quantification of SARS-CoV-2 by clinical metagenomics
Heng Xie, H. Xie (1), A. Kadam (1), K. Broadbent (1), S. Flygare (1), K. Maguire (1), M. Mangifesta (1), R. Schlaberg (1, 2), J. Rossen (1
09 July 2021 - 831
Whole blood or plasma? Shotgun metagenomics-based diagnosis of bloodstream infections using long-read MinION sequencing
Nilay Peker, N. Peker (1), A. Björnberg (2), D. Nestor (2), B. Sinha (1), N. Couto (3, 1), J. Rossen (1, 4), M. Sundqvist (2), P. Mölling (2)
09 July 2021 - 3736
Genetic characterisation of multidrug-resistant Bacteroides fragilis clinical isolates in the Netherlands
Kathleen Boiten, K. Boiten (1), E. Kuijper (2, 3), J. Prehn (3), F. Smit (3), L. Schule (1), L. Bode (4), A. Schoffelen (2), D. Notermans (2), S. Woudt (2), R. Winter (1), I. Maat (5), S. Asten, Van (3), M.C. Wong (6), J. Rossen (7), L. Veloo (1)
23 September 2020 - P206
An enrichment-based next-generation sequencing workflow for diagnosing and characterizing SARS-CoV-2 and other respiratory viruses
John Rossen, H. Xie, A. Kadam, M. Mangifesta, L. Liu, F. Mba Medie, R. Schlaberg, J. Rossen
24 April 2018 - O1088
Shotgun metagenomics and typing of bacterial DNA in 5 mL whole blood from patients with suspected bloodstream infection
Paula Mölling, P. Mölling, S. Thulin Hedberg, L. Eriksson, M. Johansson, W. Paulander, N. Couto, J. Rossen, J. Krause, A. Herbig, M. Sundqvist
24 April 2018 - P2149
Comprehensive molecular characterization of Escherichia coli isolates from urine samples of hospitalized patients in Rio de Janeiro, Brazil
Ana Carolina da Cruz Campos, A. da Cruz Campos, N. Silva Andrade, M. Chlebowicz, C. Santos, J. Delgado Correal, J. Lo-Ten-Foe, A. Paula Rosa Ignácio, P. Damasco, A. Friedrich, J. Rossen
23 April 2018 - P1845
Vancomycin resistant Clostridium innocuum carrying transposon Tn1549 with a large deletion
Monika Chlebowicz, M. Chlebowicz, S. Rosema, X. Zhou, E. Bathoorn, A. Friedrich, J. Rossen
23 April 2018 - P1513
Molecular epidemiology of multidrug-resistant Escherichia coli  in critical ill elderly patients in Rio de Janeiro
Julio Cesar Delgado Correal, J. Delgado Correal, A. Campos, A. Rosa, P. Damasco, J. Rossen, A. Friedrich
23 April 2018 - O0852
Distinction of Shigella species and Escherichia coli with MALDI-TOF MS: mission impossible?
Natalia Pshenichnaia, M. Van den Beld, F. Reubsaet, A. Evers, J. Rossen, A. Kooistra-Smid, A. Friedrich
23 April 2018 - P1623
Detection of Legionella anisa in water from hospital dental chair units and molecular characterization by whole-genome sequencing
Giuseppe Fleres, G. Fleres, N. Couto, M. Lokate, J. Rossen, S. García-Cobos, A. Friedrich, L. van der Sluis
23 April 2018 - P1629
Characterization of fosfomycin heteroresistant isolates from urine of hospitalized patients in Rio de Janeiro, Brazil
Daniel Wüthrich, A. da Cruz Campos, N. Silva Andrade, M. Chlebowicz, N. Couto, J. Lo-Ten-Foe, P. Damasco, A. Paula Rosa Ignácio, A. Friedrich, J. Rossen
22 April 2018 - P0755
Gut microbiome dynamics during an outbreak of shiga-toxin producing Escherichia coli
Azucena Rodríguez-Guardado, y. motro, A. Rokney, J. Rossen, m. gdalevich, J. Moran-Gilad
22 April 2018 - O0567
Unravelling the complex structure of mobile genetic elements through short- and long-read sequencing
Piotr Majewski, N. Couto, M. Chlebowicz, A. da Cruz Campos, E. Raangs, A. Friedrich, J. Rossen
22 April 2018 - O0452
Microbial composition of hospital-related water using next-generation amplicon-based sequencing and shot-gun metagenomics
Giuseppe Fleres, G. Fleres, N. Couto, A. Kooistra-Smid, E. van Zanten, S. García-Cobos, A. Friedrich, J. Rossen
22 April 2018 - O0350
A snapshot of the gut resistome of a middle-aged healthy population in the northern Netherlands (LifeLines)
Ana Streling, S. García-Cobos, T. Rabbers, A. Bossers, H. Schmitt, H. Harmsen, B. Sinha, A. Friedrich, J. Rossen
22 April 2018 - O0504
Optimization of a shotgun metagenomics protocol for identification and typing of dengue
Erley Lizarazo Forero, E. Lizarazo Forero, E. Raangs, M. Vincenti, S. Bethencourt, T. Jaenisch, A. Friedrich, A. Tami, N. Couto, J. Rossen
22 April 2018 - O0559
Higher resolution of dengue phylogenetic trees from Venezuela using the whole genome sequence
Erley Lizarazo Forero, E. Lizarazo Forero, M. Vincenti, S. Bethencourt, T. Jaenisch, M. Grillet, A. Friedrich, A. Tami, N. Couto, J. Rossen
22 April 2018 - O0471
Culture compared to culture-independent targeted next-generation sequencing of the 16S-23S rRNA region for the identification of orthopaedic infections
Anna M.D. Kooistra-Smid, E. van Zanten, G. Wisselink, A. Ott, W. Vogels, G. Mithoe, R. de Boer, A. Friedrich, J. Rossen, A. Kooistra-Smid
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