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ESCMID Global 2024
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From the archive: ECCMID and more before 2010
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30 April 2024 - P3276
One year of genomic surveillance of healthcare-associated bloodstream infections at a university hospital
Thomas Vognbjerg Sydenham, Kat Steinke, Silje Vermedal Hoegh, Sanne Løkkegaard Larsen, Karina Gravgaard Thomsen, Karina Kubel Vilhelmsen, Malene Gotfredsen Jakobsen, Marlene Olsen, Thøger Gorm Jensen, Thøger Gorm Hansen, Pia Steinicke, Ulrik Stenz Justesen, Anette Holm, Marianne Nielsine Skov,
29 April 2024 - P2877
Fungal species identification: a comparative analysis of nanopore-based 18S sequencing and Sanger sequencing of the large subunit (LSU)
Silje Vermedal Hoegh, Kat Steinke, Sanne Løkkegaard Larsen, Karina Gravgaard Thomsen, Marianne Nielsine Skov, Flemming Schønning Rosenvinge, Thomas Vognbjerg Sydenham
29 April 2024 - E0824
Long read 16S rRNA gene sequencing evaluated as a routine diagnostic tool improves bacterial taxonomic resolution and reduce costs
Sanne Løkkegaard Larsen, Karina Gravgaard Thomsen, Silje Vermedal Hoegh, Kat Steinke, Flemming Damgaard Nielsen, Thomas Vognbjerg Sydenham, Marianne Nielsine Skov
27 April 2024 - P2203
Nanopore-based 16S rRNA gene sequencing improves bacterial identification in clinical samples compared to Sanger-sequencing
Karina Gravgaard Thomsen, Sanne Løkkegaard Larsen, Silje Vermedal Hoegh, Kat Steinke, Flemming Damgaard Nielsen, Marianne Nielsine Skov, Thomas Vognbjerg Sydenham
27 April 2024 - P2231
Evaluation of decentralised Salmonella serovar prediction by whole genome sequencing
Kat Steinke, Marianne Nielsine Skov, Hanne Marie Holt, Karina Gravgaard Thomsen, Silje Vermedal Hoegh, Sanne Løkkegaard Larsen, Eva Litrup, Eva Møller Nielsen, Karen Loaiza, Thomas Vognbjerg Sydenham,
16 April 2023 - P1864
User-friendly bioinformatics for routine analysis of bacterial isolate sequencing in a clinical setting
Kat Steinke, Flemming Damgaard Nielsen, Karina Gravgaard Thomsen, Sanne Løkkegaard Larsen, Silje Vermedal Høgh, Marianne Nielsine Skov, Thomas Vognbjerg Sydenham
15 April 2023 - O0062
Establishing decentralised routine bacterial whole genome sequencing at a clinical microbiology department
Thomas Sydenham, Karina Gravgaard Thomsen, Kat Steinke, Silje Vermedal Hoegh, Sanne Løkkegaard Larsen, Karina Kubel Vilhelmsen, Freja Cecillie Bistrup, Marlene Olsen, Malene Gotfredsen Jakobsen, Ulrik Stenz Justesen, Thøger Gorm Jensen, Pia Steinicke, Anette Holm, Marianne Nielsine Skov
24 April 2022 - O0297
Decentralised sequencing and unified bioinformatics for SARS-CoV-2 outbreak monitoring
Kat Steinke, Lise Andersen, Sanne Løkkegaard Larsen, Silje Vermedal Høgh, Karina Gravgaard Thomsen, Marianne Nielsine Skov, Thor Bech Johannesen, Kirsten Maren Ellegaard, Thomas Vognbjerg Sydenham
23 April 2022 - P2095
Sensitivity comparision of one in-house and three commercial diagnostic systems based on nucleic acid amplification tests of SARS-CoV-2
Sanne Løkkegaard Larsen, Silje Vermedal Høgh, Karina Gravgaard Thomsen, Thøger Gorm Jensen, Marlene Olsen, Marianne Nielsine Skov
23 April 2022 - P2117
The effect of transport media on SARS-CoV-2 PCR results
Sanne Løkkegaard Larsen, Silje Vermedal Høgh, Marlene Olsen, Thøger Gorm Jensen, Marianne Nielsine Skov, Karina Gravgaard Thomsen
23 April 2022 - P1194
Optimisation of DNA extraction protocol for Illumina Miseq-based 16S rRNA gene sequencing for identification of bacterial pathogens in patient samples
Silje Vermedal Høgh, Sanne Løkkegaard Larsen, Karina Gravgaard Thomsen, Kat Steinke, Thomas Vognbjerg Sydenham, Marianne Nielsine Skov
23 April 2022 - P2103
Re-sequencing SARS-CoV-2 samples with missing data can improve quality of consensus sequences
Thomas Vognbjerg Sydenham, Kat Steinke, Silje Vermedal Hoegh, Sanne Løkkegaard Larsen, Karina Gravgaard Thomsen, Martin Larsen, Thøger Gorm Jensen, Marianne Nielsine Skov
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