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ESCMID Global 2024
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Guidelines
From the archive: ECCMID and more before 2010
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12 July 2021 - 4077
Large-scale whole genome sequencing of Escherichia coli and Klebsiella pneumoniae from diverse clinical and non-clinical sources in Thailand
Hollie Birkwood, H. Birkwood (1), M. Gibbon (1), P. Dulyayangkul (2), N. Couto (1), E. Feil (1)
12 July 2021 - 2654
The CHASRI element, encoding resistance to heavy metals, is associated with Klebsiella isolates from hospital patients and may be co-selected alongside antibiotic resistance
Natacha Couto, N. Couto (1), H. Thorpe (2), M. Gibbon (1), R. Phillips (1), S. Brisse (3), C. Parada Rodrigues (3), S. David (4), C. Merla (5), M. Corbella (5), C. Ferrari (5), D. Sassera (5), J. Corander (2), E.J. Feil (1)
11 July 2021 - 4588
The virulence factor aerobactin (lineage iuc3) is strongly associated with isolates of Klebsiella spp. recovered from pigs
Marjorie Gibbon, M. Gibbon (1), H. Thorpe (2), N. Couto (1), S. Brisse (3), C. Parada Rodrigues (3), S. David (4), C. Merla (5), M. Corbella (5), C. Ferrari (5), D. Sassera (5), J. Corander (2), E.J. Feil (1)
11 July 2021 - 3226
Rapid antibiotic resistance prediction from genome sequence data for Mycobacterium tuberculosis using long- compared to short-read sequencing
Nilay Peker, N. Peker (1), L. Schuele (1), N. Kok (1), M. Terrazos (2), S.M. Neuenschwander (2), J. Beer (1), O. Akkerman (3), S. Peter (4), A. Ramette (2), M. Merker (5), S. Niemann (5), N. Couto (1, 6), B. Sinha (1), J. Rossen (1, 7)
09 July 2021 - 4293
Genomic characterisation of colistin-resistant Enterobacter spp. isolated from the water environment of high-risk hospital units
Giuseppe Fleres, G. Fleres (1), A. Mirabile (1), M. Lokate (1), N. Couto (1, 2), A.W. Friedrich (1), S. García-Cobos (1, 3)
09 July 2021 - 831
Whole blood or plasma? Shotgun metagenomics-based diagnosis of bloodstream infections using long-read MinION sequencing
Nilay Peker, N. Peker (1), A. Björnberg (2), D. Nestor (2), B. Sinha (1), N. Couto (3, 1), J. Rossen (1, 4), M. Sundqvist (2), P. Mölling (2)
09 July 2021 - 2637
Diversity of plasmids in a large collection of Klebsiella spp. strains from clinical and non-clinical settings
Natacha Couto, N. Couto (1), R. Phillips (2), H. Thorpe (3), M. Gibbon (1), S. Brisse (4), C. Parada Rodrigues (4), S. David (5), C. Merla (6), M. Corbella (6), C. Ferrari (6), D. Sassera (6), J. Corander (3), E.J. Feil (1)
09 July 2021 - 3093
Diversity of yersiniabactin in Klebsiella ornithinolytica from clinical and non-clinical settings
Natacha Couto, N. Couto (1), W. Phillips (1), H. Thorpe (2), M. Gibbon (1), S. Brisse (3), C. Parada Rodrigues (3), S. David (4), C. Merla (5), M. Corbella (5), C. Ferrari (5), D. Sassera (5), J. Corander (2), E.J. Feil (1)
24 April 2018 - O1088
Shotgun metagenomics and typing of bacterial DNA in 5 mL whole blood from patients with suspected bloodstream infection
Paula Mölling, P. Mölling, S. Thulin Hedberg, L. Eriksson, M. Johansson, W. Paulander, N. Couto, J. Rossen, J. Krause, A. Herbig, M. Sundqvist
23 April 2018 - P1623
Detection of Legionella anisa in water from hospital dental chair units and molecular characterization by whole-genome sequencing
Giuseppe Fleres, G. Fleres, N. Couto, M. Lokate, J. Rossen, S. García-Cobos, A. Friedrich, L. van der Sluis
23 April 2018 - P1629
Characterization of fosfomycin heteroresistant isolates from urine of hospitalized patients in Rio de Janeiro, Brazil
Daniel Wüthrich, A. da Cruz Campos, N. Silva Andrade, M. Chlebowicz, N. Couto, J. Lo-Ten-Foe, P. Damasco, A. Paula Rosa Ignácio, A. Friedrich, J. Rossen
22 April 2018 - O0567
Unravelling the complex structure of mobile genetic elements through short- and long-read sequencing
Piotr Majewski, N. Couto, M. Chlebowicz, A. da Cruz Campos, E. Raangs, A. Friedrich, J. Rossen
22 April 2018 - O0452
Microbial composition of hospital-related water using next-generation amplicon-based sequencing and shot-gun metagenomics
Giuseppe Fleres, G. Fleres, N. Couto, A. Kooistra-Smid, E. van Zanten, S. García-Cobos, A. Friedrich, J. Rossen
22 April 2018 - O0504
Optimization of a shotgun metagenomics protocol for identification and typing of dengue
Erley Lizarazo Forero, E. Lizarazo Forero, E. Raangs, M. Vincenti, S. Bethencourt, T. Jaenisch, A. Friedrich, A. Tami, N. Couto, J. Rossen
22 April 2018 - O0559
Higher resolution of dengue phylogenetic trees from Venezuela using the whole genome sequence
Erley Lizarazo Forero, E. Lizarazo Forero, M. Vincenti, S. Bethencourt, T. Jaenisch, M. Grillet, A. Friedrich, A. Tami, N. Couto, J. Rossen
21 April 2018 - P0462
Transposons on the move: a better way of outbreak analyses of vancomycin-resistant Enterococcus faecium by a type and location of the vanB-carrying transposons
Hinrik von Wulffen, M. Chlebowicz, X. Zhou, N. Couto, E. Raangs, J. Arends, E. Bathoorn, A. Friedrich, J. Rossen
21 April 2018 - P0091
Detection of antimicrobial resistance genes using shotgun metagenomics directly on human and pig samples
Fernando Pasteran, L. Schuele, N. Couto, E. Raangs, C. Mendes, J. Carriço, C. Erdmann, K. Strutzberg-Minder, I. Autenrieth, A. Friedrich, S. Peter, J. Rossen
21 April 2018 - P0088
Comparison of different sequencing specifications for improved microbial diagnostic quality of clinical samples
Nilay Peker, N. Peker, S. Garcia-Croes, N. Couto, B. Dijkhuizen, E. van Zanten, G. Wisselink, A. Kooistra-Smid, A. Friedrich, B. Sinha, J. Rossen
21 April 2018 - P0089
Better, faster, stronger: advancements for bacterial identification through 16S-23S rDNA data analysis
Judith Fonville, N. Peker, S. Garcia-Croes, J. Rossen, B. Dijkhuizen, H. Wiersma, E. van Zanten, G. Wisselink, A. Kooistra-Smid, A. Friedrich, B. Sinha, N. Couto
28 April 2013 - P1473
Comparative study of extended-spectrum beta-lactamases (ESBL)-producing and non-producing ST131 Escherichia coli isolates from human and companion animals in the south of Europe
Lorena Lopez-Cerero, C. Pomba, L. López-Cerero*, M. Bellido, L. Serrano, A. Belas, N. Couto, P. Cavaco-Silva, J. Rodríguez-Baño, A. Pascual (Lisbon, PT; Seville, ES; Caparica, PT)
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