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ESCMID Global 2024
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Guidelines
From the archive: ECCMID and more before 2010
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04 September 2024
Future perspectives: How can developments change clinical work – pros and cons
John WA Rossen, Hege Vangstein Aamot, Adrian Egli, Eric CJ Claas
02 September 2024
Introduction to next-generation sequencing and technology
John WA Rossen
29 April 2024 - O0949
The European network for the rapid identification of anaerobes part two: continuing the optimisation of the MALDI-TOF MS database 
Kathleen Boiten, J. Rossen, A. Veloo
14 June 2023
Metagenomics in clinical microbiology
John Rossen
14 June 2023
Viral metagenomics during outbreaks
John Rossen
23 April 2022 - P1159
Comparison of intestinal microbiota profiles of faecal samples, rectal swabs and mucosal biopsies in patients with inflammatory bowel disease: a multi-centre, prospective, observational study
Tessel Van Rossen, Kim Van Den Hoek, Ad Van Bodegraven, Andries Budding, Paul Savelkoul
23 April 2022 - P1183
Pathogen surveillance by mNGS for intubated patients: a reflex to culture model
Povilas Kavaliauskas, Barbara Kuklinska, Ljlijana Vasovic, Stephanie Vaca, Ivy Estabrooke, John Rossen, Robert Schlaberg, Arryn Craney
23 April 2022 - P1189
Analytical performance of a precision metagenomic approach for pathogen detection in urinary tract infections
Marta Mangifesta, Kate Broadbent, Genivaldo Silva, Rita Stinnett, Amy Hanson, Anagha Kadam, John Rossen, Jamie Lemon, Robert Schlaberg
23 April 2022 - P1188
Precision metagenomics for broad detection of genitourinary pathogens and associated antimicrobial resistance markers
Courtney Gonzalez, Marta Mangifesta, Rita Stinnett, Kate Broadbent, Amy Hanson, Keith Arora-Williams, John Rossen, Eun A Kim, Jamie Lemon, Robert Schlaberg
23 April 2022 - P1187
Optimised 16S metagenomics versus shotgun metagenomics with long-read sequencing technology for diagnostic use
Amelia Björnberg, Nilay Peker, Jean-Luc Tison, Marita Ekström, David Nestor, Bianca Stenmark, Bhanu Sinha, Natacha Couto, John Rossen, Martin Sundqvist, Paula Mölling
2021
European Society of Clinical Microbiology and Infectious Diseases: 2021 update on the treatment guidance document for Clostridioides difficile infection in adults
Clinical Microbiology and Infection. 2021 Dec;27 Suppl 2:S1-S2. doi: https://doi.org/10.1016/j.cmi.2021.09.038
Joffrey van Prehn, Elena Reigadas, Erik H. Vogelzang, Emilio Bouza, Adriana Hristea, Benoit Guery, Marcela Krutova, Torbjorn Noren, Franz Allerberger, John E. Coia, Abraham Goorhuis, Tessel M. van Rossen, Rogier E. Ooijevaar, Karen Burns, Bente R. Scharvik Olesen, Sarah Tschudin-Sutter, Mark H. Wilcox, Maria J.G.T., Vehreschild, Fidelma Fitzpatrick, Ed J. Kuijper
2021
European Society of Clinical Microbiology and Infectious Diseases: 2021 update on the treatment guidance document for Clostridioides difficile infection in adults
J van Prehn, E Reigadas, E H Vogelzang, E Bouza, A Hristea, B Guery, M Krutova, T Norén, F Allerberger, J Coia, A Goorhuis, T M van Rossen, R E Ooijevaar, K Burns, B R Scharvik Olesen, S Tschudin-Sutter, M H Wilcox, M Vehreschild, F Fitzpatrick, E J Kuijper, guideline committee of the European Study Group on Clostridioides difficile
11 July 2021 - 3226
Rapid antibiotic resistance prediction from genome sequence data for Mycobacterium tuberculosis using long- compared to short-read sequencing
Nilay Peker, N. Peker (1), L. Schuele (1), N. Kok (1), M. Terrazos (2), S.M. Neuenschwander (2), J. Beer (1), O. Akkerman (3), S. Peter (4), A. Ramette (2), M. Merker (5), S. Niemann (5), N. Couto (1, 6), B. Sinha (1), J. Rossen (1, 7)
09 July 2021 - 2520
Quantification of SARS-CoV-2 by clinical metagenomics
Heng Xie, H. Xie (1), A. Kadam (1), K. Broadbent (1), S. Flygare (1), K. Maguire (1), M. Mangifesta (1), R. Schlaberg (1, 2), J. Rossen (1
09 July 2021 - 831
Whole blood or plasma? Shotgun metagenomics-based diagnosis of bloodstream infections using long-read MinION sequencing
Nilay Peker, N. Peker (1), A. Björnberg (2), D. Nestor (2), B. Sinha (1), N. Couto (3, 1), J. Rossen (1, 4), M. Sundqvist (2), P. Mölling (2)
09 July 2021 - 3040
Short- and long-term effects of hospitalisation and oral trimethoprim-sulfadiazine administration on the faecal microbiota and resistome in horses
Mathijs J. P. Theelen, M.J.P. Theelen (1, 2), R.E.C. Luiken (1), J.A. Wagenaar (1), M.M. Sloet Van Oldruitenborgh-Oosterbaan (2), J.W.A. Rossen (3), F.J.W.C. Schaafstra (4), D.A. Van Doorn (5, A.L. Zomer (1)
09 July 2021 - 3736
Genetic characterisation of multidrug-resistant Bacteroides fragilis clinical isolates in the Netherlands
Kathleen Boiten, K. Boiten (1), E. Kuijper (2, 3), J. Prehn (3), F. Smit (3), L. Schule (1), L. Bode (4), A. Schoffelen (2), D. Notermans (2), S. Woudt (2), R. Winter (1), I. Maat (5), S. Asten, Van (3), M.C. Wong (6), J. Rossen (7), L. Veloo (1)
23 September 2020 - P206
An enrichment-based next-generation sequencing workflow for diagnosing and characterizing SARS-CoV-2 and other respiratory viruses
John Rossen, H. Xie, A. Kadam, M. Mangifesta, L. Liu, F. Mba Medie, R. Schlaberg, J. Rossen
20 September 2019
SOLIDNESS - Surveillance Of mobiLome meDiated aNtibiotic rEsiStance Spread
Natacha Couto, Natacha Couto | John Rossen
20 September 2019
Identification and typing of dengue viruses directly from patient samples with DEN-IM
Mario N. Ramirez, Catarina Mendes | Erley Lizarazo | Miguel Machado | Diogo Silva | Adriana Tami | Mario N. Ramirez | Natacha Couto | John Rossen | Joao A. Carrico
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